Hierarchically structured 3D printed porous carbons monoliths, exhibiting cylinder structures composed of tetragonal cubic centered unit cells, were studied for their applicability in adsorptive pentane (C5) and hexane (C6) alkane isomers separation (linear/branched). Three materials of the same macroscopic shape were employed in the study, which varied in the micro- and mesoporosity by changing the final CO2 activation step: non-activated and activated at 1133 K for 6 and 12 h, respectively. Fixed bed breakthrough experiments were conducted for C5/C6 isomer feed mixtures, covering 373, 423, and 473 K temperatures and total alkane partial pressure up to 50.0 kPa. Results demonstrated that the initial porosity for the non-activated monolith enables the complete separation of linear from their respective branched isomers (slightly adsorbed) via a near molecular sieving effect, showing the following sorption hierarchy order (nC6 > nC5) >> > >> (2MP > 3MP > 23DMB approximate to iC5 > 22DMB). Regarding the CO2-activated monoliths, both showed a completely different picture, being all the alkane isomers adsorbed (much higher loadings) following the sorption hierarchy order: nC6 > 3MP > 2MP > 23DMB > 22DMB > nC5 > iC5. These results indicate that besides enhancing the microporosity and available specific surface area, the pore sieving effect of branched alkanes is lost due to the pore widening during the CO2 activation. The breakthrough data for the non-activated monolith is also numerically fitted with a convenient, dynamic adsorption model.